Thread:Elia0224/@comment-32769624-20181202025959/@comment-4708882-20191204023818

Agent Smith is a hard no, he's programmed that way with even his creator treating it as part of the process they destined him for as the "Anti-Neo" which was their way to basically reset the Matrix when needed. The architect makes it clear it happened more than once with the implication based off the oracle's visions being predicted outcomes and them working to have it reset by guiding Neo to resetting it.

The Scientist rather hard to say given it seems little is known outside some minor instructions.