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The leader of the Brotherhood, The Councillor

The Brotherhood are a race of bipedal lizards and inter-dimensional conquerors who serve as the main antagonists of the 2003 TMNT episode Trouble with Augie.

History

The Brotherhood travel to other worlds and dimensions so they trick the inhabitants by befriending them and eat them. However they were soon stopped by a peaceful technologically advanced race known as the Zodac, after befriending them by pretending to offer peaceful coexistence, taking over their city, and destroying their civilization, the Zodacs then disabled the transdimensional device, that was used bring the Brotherhood to their dimension, to save other dimensions from their fate and keep the Brotherhood trapped within theirs. Without the transdimensional device the Brotherhood could only serve as their conquering of other worlds came to an end.

Then April's uncle Professor August "Augie" O'Neil came to the dimension and the Brotherhood befriended Augie, whom they called the Magician, and enlisted to help repair the transdimensional device as he used ones on Earth and the dimension he was previously in to arrive in the city. They claimed the city was their and they wanted to bring their advanced technology to Earth, when in reality they intended to resume their conquest of other worlds and devouring the people, starting with Earth. Augie used transdimensional device to send a message to Earth that the Brotherhood wanted to help them, which crossed paths with April and Donatello who traveled to the city and where welcomed by the Brotherhood and taken to Augie.

While Donatello chose to explore the city he eavesdropped on the leader of the Brotherhood, the Councillor, talking to another member and learned of the Brotherhood's true intentions. After Donny warned April and Augie, the Councillor and other members of Brotherhood revealed their true colors and attacked them, but they managed to escape to a place in the city that the Brotherhood called the Forbidden Zone where the skeletons of the Zodacs where kept. In the Forbidden Zone the three learned of what the Brotherhood did to the Zodacs, and Augie vowed to not allow the Brotherhood to reach Earth. However, the Brotherhood followed to the Forbidden Zone and surrounded them. While April and Donny managed to escape from the Brotherhood, they managed to capture Augie and force to return to repairing the transdimensional device. As the Brotherhood began to assemble their army to begin their invasion for Earth, Don and April stuck back into the lab to see Augie. After Donny explained his plan to stop the Brotherhood by using the magnetic charges the Zodacs used to disable the transdimensional device, Augie tells Don it won't because he repaired the device with shielding the charges. However, April gets an idea and the three travel to the wasp world Augie traveled to before arriving in the city, with The Councillor and some warriors of the Brotherhoof following mistakenly believing the world is Earth. After Donatello, April, and Augie use the transdimensional device in the Wasp World to return Earth with the magnetic charges timed to go off and destroy the transdimensional device, the Brotherhood comes and starts looking for them. They are then attacked by the giant wasps that live in the world and end up getting killed by them.

It is unknown what happened to the rest of the Brotherhood after that, but it is presumed they eventually starved and died out, ending their reign of conquest for good.

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Comics
Shredder (Mirage, Archie, IDW, Mirage Comics, Raphael, Doctor Shreddarius & Lady Shredder) | Foot Clan | Foot Elite | Karai | Ch'rell | Baxter Stockman (Archie & IDW) | Krang (Archie & IDW) | Hun | Purple Dragons | Adolf Hitler | Ninjara | Slash | Leatherhead | Triceratons | Commander Mozar | Zanramon | Shredder Clones | Tokka & Rahzar | Alopex | Kitsune | Koya | Bludgeon | Rat King | Agent Bishop | Bebop and Rocksteady | Savanti Romero | Skonk | Darius Dun | Tatsu | Master Sliver | General Tragg | Dragon | Null (IDW Version) | Maligna (IDW Version) | Craniac | Armaggon | Old Hob

Television
1987 TV series: Shredder | Bebop & Rocksteady | Baxter Stockman | Krang | Rat King | Lord Dregg | Antrax | Barney Stockman | Don Turtelli | General Tragg | Groundchuck & Dirtbag | Krangazoids
1997 TV series: Foot Clan (Shredder) | The Rank (Dragon Lord | Wick | Dr. Quease | Good Dragon | Rank Lieutenant | Clone Turtles) | Simon Bonesteel | Silver | Monkey Thief Mick and Monkey Thief Dick | VamMi | Bing | Chi Chu | Heavy Duke
2003 TV series: Utrom Shredder (Future Self, Tengu Shredder & Cyber Shredder) | Karai | Baxter Stockman | Rat King | Drako | Ultimate Ninja | Hun | Darius Dun | Sh'Okanabo | Dark Turtles | Viral | Torbin Zixx | Agent Bishop | General Blanque | Zanramon | Commander Mozar | Lonae | Mr. Touch and Mr. Go | Abigail Finn | Parker | Harry Parker | Kluh | Ammag | Levram Wizard | Dragon Face | Johnny | Two Ton | Yukio Mashimi | Moriah | Weasel | Master Sliver | Savanti Romero | Skonk | Triple Threat | Nano | Mephos | Boss Zukko | High Mage | Lord Hebi | The Brotherhood (Councilor) | Garbageman
2012 TV series: Foot Clan (Shredder, Karai, Tiger Claw, Rahzar, Fishface, Bebop, Rocksteady, Baxter Stockman, Antrax, Shredder Mutants/Mega Shredder, Hattori Tatsu, Chrome Dome & Koga Takuza) | The Kraang (Kraang Prime & Kraang Subprime) | Triceraton Empire (Emperor Zanmoran & Captain Mozar) | Lord Dregg | Armaggon | Savanti Romero | Newtralizer | Slash | Kavaxas | Rat King | Purple Dragons (Hun & Fong) | Visiozo's Mob (Don Vizioso, Fulci Twins & The Hammer) | Snakeweed | Spider Bytez | Overmind | Za-Naron | Dracula | Justin | Mutagen Man | Pizza Face | Dream Beavers | Speed Demon | Squirrelanoids | Chimera | Spy-Roach | Maximus Kong | Verminator Rex | Jei
Rise of the TMNT: Baron Draxum | Albearto | Baxter Stockboy | Big Mama | Meat Sweats | Hypno-Potamus | Foot Brute | Foot Lieutenant | Warren Stone | Repo Mantis | Evil League of Mutants | Shredder

Movies
TMNT 1 & 2: Foot Clan (Shredder, Tatsu, Tokka and Rahzar)
TMNT 3: Walker | Lord Norinaga
TMNT (2007): Stone Generals (Aguila, Gato, Mono & Serpiente) | Foot Clan (Karai)
TMNT (2014): Foot Clan (Shredder, Eric Sacks, Karai & Baxter Stockman)
TMNT: Out of the Shadows: Krang | Foot Clan (Shredder, Karai, Baxter Stockman, Bebop and Rocksteady)
Batman vs. TMNT: Foot Clan (Shredder & Baxter Stockman) | League of Assassins (Ra's al Ghul, Ubu & Talia al Ghul) | Joker | Harley Quinn | Scarecrow | Mr. Freeze | Poison Ivy | Bane | Two-Face | Penguin

Video Games
NES Platformer: Shredder | Mechaturtle
TMNT II: The Arcade Game: Shogun | Tora
TMNT: Mutants in Manhatten: Shredder

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